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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57304459_57319965_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57304459 - 57319965
Intron Length:
15507

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTGTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAACAT
U12 Branch Point Sequence:
ACTCCCCTAACA
Flanking Amino Acid:
YFEGLYPTYYICRSYEDCCG
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.8
34.5
Major BPS
58.7
0.22
1.2
67
38
Major PPT
84.9
0.79
0.8
80.9
31
Minor 5ss
39.9
-1.1
2.9
56.1
41.4
Minor BPS
63.4
0.42
1.7
72.38
39.1

Associated Gene:

Gene:
VOPP1
Ensembl Gene ID:
ENSAPLG00000018488
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029172
57298349 - 57357459
59111