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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57320025_57356952_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57320025 - 57356952
Intron Length:
36928

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGCCG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATATTAATAATA
Flanking Amino Acid:
VALLLSLLWECTEAKKHCWY
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
0.9
63.1
43
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
92.4
0.95
0.6
88.1
21.7
Minor 5ss
25.6
-2.8
3
30.2
43
Minor BPS
49.6
-0
1.8
64.7
35

Associated Gene:

Gene:
VOPP1
Ensembl Gene ID:
ENSAPLG00000018488
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029172
57298349 - 57357459
59111