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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57421586_57422912_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57421586 - 57422912
Intron Length:
1327

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATGGCA
5'SS Class:
major
3'SS Sequence:
TTTTTGATGGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTTTTTTGATG
Flanking Amino Acid:
HELWEMAEQKDKVLHVEHIE
Intron Amino Acid Position:
119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
68.6
36.2
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
73
0.52
1
70.7
39.8
Minor 5ss
29.6
-2.3
3.4
39.3
46
Minor BPS
70.1
0.49
1.2
73.17
33.7

Associated Gene:

Gene:
BLVRA
Ensembl Gene ID:
ENSAPLG00000003819
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003918
57409839 - 57443231
33393