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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57423011_57423616_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57423011 - 57423616
Intron Length:
606

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTTGA
5'SS Class:
major
3'SS Sequence:
GTATCCCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TACTTTTTAAAG
Flanking Amino Acid:
TENRSHEETIRMFLEAGKHV
Intron Amino Acid Position:
86

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
69.5
37.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
78
0.63
0.9
74.1
36.4
Minor 5ss
45.7
-0.5
2.5
59.1
45.3
Minor BPS
60.7
0.2
1.5
60.98
41.1

Associated Gene:

Gene:
BLVRA
Ensembl Gene ID:
ENSAPLG00000003819
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003918
57409839 - 57443231
33393