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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57491532_57494449_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57491532 - 57494449
Intron Length:
2918

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCTC
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCATCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAG
U12 Branch Point Sequence:
TTTCTCTCATCT
Flanking Amino Acid:
GCVVMYNLMQKGFARTQYYQ
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
75.6
0.64
1.5
84
34.5
Major PPT
76.9
0.61
0.8
70.4
35.3
Minor 5ss
40.5
-1.1
3
54
37
Minor BPS
58.8
0.35
1.8
81.56
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026019
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032750
57446800 - 57499411
52612
ENSAPLT00000023242
57446800 - 57496820
50021