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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57508533_57509367_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57508533 - 57509367
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGA|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
CCTTCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTCCTTTTAACG
Flanking Amino Acid:
FIKTLLVKKPEDRATAEECL
Intron Amino Acid Position:
302

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
77
33.6
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
82.5
0.73
0.7
76.7
25.3
Minor 5ss
36.3
-1.6
2.7
38.8
40.3
Minor BPS
67.6
0.41
1.3
67.89
40.1

Associated Gene:

Gene:
STK17A
Ensembl Gene ID:
ENSAPLG00000003875
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003984
57508199 - 57529311
21113