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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57509548_57509648_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57509548 - 57509648
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTGA
5'SS Class:
strong_major
3'SS Sequence:
ACTGTCAATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTGTTTTTTACT
Flanking Amino Acid:
YDPISTATDMWSIGVLAYVM
Intron Amino Acid Position:
242

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.7
0.89
0.9
76.8
34.8
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
63.7
0.31
1
60.4
40
Minor 5ss
39.7
-1.2
2.8
46.7
43.9
Minor BPS
67
0.62
1.6
82.93
38.6

Associated Gene:

Gene:
STK17A
Ensembl Gene ID:
ENSAPLG00000003875
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003984
57508199 - 57529311
21113