About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57509698_57510417_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57509698 - 57510417
Intron Length:
720

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCCCAAATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
TTTCCCCCAAAT
Flanking Amino Acid:
REIMGTPEYVAPEILSYDPI
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
66.7
0.41
1
57.8
39
Major PPT
63.1
0.3
0.9
59.3
30.3
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
53.9
0.2
2
80.66
40.1

Associated Gene:

Gene:
STK17A
Ensembl Gene ID:
ENSAPLG00000003875
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003984
57508199 - 57529311
21113