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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57510545_57515691_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57510545 - 57515691
Intron Length:
5147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAGTG
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TGATTTTGAAGG
Flanking Amino Acid:
RNNVVHLDLKPQNILLTSKS
Intron Amino Acid Position:
184

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
78.9
35.3
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
89.9
0.9
0.7
88
29.4
Minor 5ss
34
-1.8
3.5
46.6
48.7
Minor BPS
48
-0.2
1.8
53.22
41.7

Associated Gene:

Gene:
STK17A
Ensembl Gene ID:
ENSAPLG00000003875
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003984
57508199 - 57529311
21113