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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57515837_57522784_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57515837 - 57522784
Intron Length:
6948

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGCTGTTCCATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTGAA
U12 Branch Point Sequence:
TAGTCTTTGAAA
Flanking Amino Acid:
TATEMILVLEYAAGGEIFDQ
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
79.9
32.8
Major BPS
74.8
0.62
1
67
39.8
Major PPT
70.2
0.46
0.9
64.7
36.6
Minor 5ss
40.2
-1.1
2.8
54.6
37.1
Minor BPS
62.9
0.4
1.4
68
38.3

Associated Gene:

Gene:
STK17A
Ensembl Gene ID:
ENSAPLG00000003875
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003984
57508199 - 57529311
21113