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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57522998_57529120_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57522998 - 57529120
Intron Length:
6123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CCTTTAATTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
TCTCCTTTAATT
Flanking Amino Acid:
YRLSPGRELGRGKFAVVKKC
Intron Amino Acid Position:
64

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
0.9
67.5
37.7
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
77
0.61
0.8
74.6
33.8
Minor 5ss
33.6
-1.9
3
40.8
45.6
Minor BPS
76.8
0.92
1.1
84.98
35.9

Associated Gene:

Gene:
STK17A
Ensembl Gene ID:
ENSAPLG00000003875
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003984
57508199 - 57529311
21113