Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57551598_57552702_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57551598 - 57552702

Intron Length:

1105

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAA|GTAAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTGTTCCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

CTGTTCTTACAA

Flanking Amino Acid:

TEALVRGFYEVVDSRLVSVF

Intron Amino Acid Position:

1466

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.2

0.88

0.9

84.2

26.3

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

91.3

0.93

0.7

84.6

Minor 5ss

37.7

-1.4

2.7

46.1

36.1

Minor BPS

53.7

0.11

1.8

63.53

43.1

Associated Gene:

Gene:

HECW1

Ensembl Gene ID:

ENSAPLG00000004015

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040914

57541647 - 57735379

193733

ENSAPLT00000004165

57541647 - 57795660

254014