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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57579002_57581906_R

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57579002 - 57581906
Intron Length:
2905

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGGAAC
5'SS Class:
major
3'SS Sequence:
TTCTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCTTCTTTACTT
Flanking Amino Acid:
KLYVTFVGEEGLDYSGPSRE
Intron Amino Acid Position:
1289

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.5
0.51
1.1
63.9
42.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.9
0.9
0.6
88.2
21.5
Minor 5ss
30.7
-2.2
3.3
33.6
42.2
Minor BPS
69.6
0.69
1.6
82.98
39.3

Associated Gene:

Gene:
HECW1
Ensembl Gene ID:
ENSAPLG00000004015
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040914
57541647 - 57735379
193733
ENSAPLT00000004165
57541647 - 57795660
254014