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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57582021_57583430_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57582021 - 57583430
Intron Length:
1410

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
CCTCCCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAATCAT
U12 Branch Point Sequence:
AGATCTCTATTT
Flanking Amino Acid:
KGYGQGPGKIKLIIRRDHLL
Intron Amino Acid Position:
1251

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.8
89.7
22.3
Major BPS
62.7
0.32
1.3
66
40.9
Major PPT
81.9
0.72
0.7
75.9
26
Minor 5ss
37.9
-1.4
3
51.7
39.1
Minor BPS
47.7
-0.1
1.9
64.74
39.8

Associated Gene:

Gene:
HECW1
Ensembl Gene ID:
ENSAPLG00000004015
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040914
57541647 - 57735379
193733
ENSAPLT00000004165
57541647 - 57795660
254014