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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57588858_57589060_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57588858 - 57589060
Intron Length:
203

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCCAA
5'SS Class:
major
3'SS Sequence:
TTTGCTTTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAA
U12 Branch Point Sequence:
TCTGTATCACTT
Flanking Amino Acid:
NQHHHETLPLAYNDKIVAFL
Intron Amino Acid Position:
1114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
65
42.7
Major BPS
62
0.3
1
62.3
30.4
Major PPT
88.4
0.86
0.8
80.8
36.8
Minor 5ss
36.7
-1.5
3
39.2
46.1
Minor BPS
42.5
-0.4
2
60.14
44.1

Associated Gene:

Gene:
HECW1
Ensembl Gene ID:
ENSAPLG00000004015
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040914
57541647 - 57735379
193733
ENSAPLT00000004165
57541647 - 57795660
254014