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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57607311_57612934_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
57607311 - 57612934
Intron Length:
5624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCAACCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTCCAA
U12 Branch Point Sequence:
TTCTTTCCAACC
Flanking Amino Acid:
YPTIDEPLPPNWEARIDSHG
Intron Amino Acid Position:
838

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
81.6
33.2
Major BPS
68.1
0.45
1.3
78.7
34.9
Major PPT
68.5
0.42
0.8
60.3
35.5
Minor 5ss
55.3
0.18
2.7
73.8
36.4
Minor BPS
49.9
-0
1.9
66.52
39.4

Associated Gene:

Gene:
HECW1
Ensembl Gene ID:
ENSAPLG00000004015
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040914
57541647 - 57735379
193733
ENSAPLT00000004165
57541647 - 57795660
254014