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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57644633_57669424_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57644633 - 57669424
Intron Length:
24792

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTAAGTTAT
5'SS Class:
major
3'SS Sequence:
CTTCTTCCAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TCCTTCTCACCT
Flanking Amino Acid:
SVTVKNNAAPIFKSITNEDS
Intron Amino Acid Position:
187

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.3
75.3
37.4
Major BPS
85
0.87
0.8
85.6
23
Major PPT
78
0.63
0.8
74.4
29.2
Minor 5ss
43.7
-0.7
2.9
62.8
42
Minor BPS
52.9
0.17
1.9
71.07
46.1

Associated Gene:

Gene:
HECW1
Ensembl Gene ID:
ENSAPLG00000004015
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040914
57541647 - 57735379
193733
ENSAPLT00000004165
57541647 - 57795660
254014