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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5766816_5777823_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5766816 - 5777823
Intron Length:
11008

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTGACAA
U12 Branch Point Sequence:
TTTCTTTTGACA
Flanking Amino Acid:
DDGKKSVTYQVIGKDDVAVP
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
86.2
29.3
Major BPS
58.4
0.21
1.2
67
39.8
Major PPT
85.5
0.8
0.9
83.5
31.6
Minor 5ss
44.5
-0.6
2.5
60.9
43.5
Minor BPS
71.5
0.67
1.1
79.17
30

Associated Gene:

Gene:
EXOG
Ensembl Gene ID:
ENSAPLG00000012196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012712
5766354 - 5787774
21421