Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57716754_57735321_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

57716754 - 57735321

Intron Length:

18568

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTCAGTGTG

5'SS Class:

strong_major

3'SS Sequence:

TTTTTCTTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAAATAC

U12 Branch Point Sequence:

TTTTTCTTCACA

Flanking Amino Acid:

MLLHLCSVKNLYQNRFLGL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

1.2

76.2

39.9

Major BPS

49.9

-0

1.1

47.4

35.7

Major PPT

91.6

0.94

0.6

87.6

22.6

Minor 5ss

31.7

-2.1

3.1

40.6

45.6

Minor BPS

75.4

0.79

1.7

86.69

32.1

Associated Gene:

Gene:

HECW1

Ensembl Gene ID:

ENSAPLG00000004015

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000040914

57541647 - 57735379

193733