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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57716754_57795630_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57716754 - 57795630
Intron Length:
78877

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAAATAC
U12 Branch Point Sequence:
TTTTTCTTCACA
Flanking Amino Acid:
MSCAQAGILQNLYQNRFLGL
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
73
38.2
Major BPS
49.9
-0
1.1
47.4
35.7
Major PPT
91.6
0.94
0.6
87.6
22.6
Minor 5ss
31
-2.2
3.3
41
45.6
Minor BPS
75.4
0.79
1.7
86.69
32.1

Associated Gene:

Gene:
HECW1
Ensembl Gene ID:
ENSAPLG00000004015
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004165
57541647 - 57795660
254014