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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5781154_5782791_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5781154 - 5782791
Intron Length:
1638

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAGGATTT
5'SS Class:
major
3'SS Sequence:
TTTCTTCATGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TTTCAATGAAAT
Flanking Amino Acid:
APAGDNKFSTRAMAETFYLS
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
64.9
0.35
1.1
66.6
40
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
85.6
0.8
0.8
81.6
29.2
Minor 5ss
44.7
-0.6
3.4
70
41.5
Minor BPS
48.3
-0
2
74.9
40.4

Associated Gene:

Gene:
EXOG
Ensembl Gene ID:
ENSAPLG00000012196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012712
5766354 - 5787774
21421