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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5786523_5787626_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5786523 - 5787626
Intron Length:
1104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTCTGTTTATTT
Flanking Amino Acid:
EPTPERVLPEEPVEDSLLEK
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
1
67.1
39.6
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
94.2
0.99
0.5
93.1
16
Minor 5ss
31.3
-2.1
3.3
34.9
41.1
Minor BPS
53.6
0.19
2
74.81
43.2

Associated Gene:

Gene:
EXOG
Ensembl Gene ID:
ENSAPLG00000012196
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012712
5766354 - 5787774
21421