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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57877196_57877870_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57877196 - 57877870
Intron Length:
675

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTCGGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TATTTTTCATTT
Flanking Amino Acid:
RNPTNLIKIKRNIDVCPECG
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.3
0.41
1.1
55.3
43.5
Major BPS
100
1.24
0.5
100
0
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
35.4
-1.7
3.6
50.2
46.4
Minor BPS
52
0.14
1.7
72.57
39

Associated Gene:

Gene:
MRPL32
Ensembl Gene ID:
ENSAPLG00000004159
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004254
57876941 - 57878404
1464