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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57880665_57881041_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57880665 - 57881041
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATATAAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
TTTGATATAATA
Flanking Amino Acid:
LVYSGMGPDYRVLVHRARKL
Intron Amino Acid Position:
325

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
0.9
78.3
30.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
85.6
0.8
0.7
84.6
30.4
Minor 5ss
40.5
-1.1
2.7
50.4
46.1
Minor BPS
50.8
0.02
1.8
68.87
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022687
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045319
57877881 - 57883618
5738