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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57881165_57881447_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57881165 - 57881447
Intron Length:
283

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TGTATTTTATTT
Flanking Amino Acid:
ASVMQEYTQSGGVRPFGVSL
Intron Amino Acid Position:
366

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
76.2
39.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.2
0.88
0.6
86
21
Minor 5ss
34
-1.8
3.3
40.9
45.4
Minor BPS
55.9
0.26
1.6
72.59
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022687
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045319
57877881 - 57883618
5738