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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57882595_57883062_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57882595 - 57883062
Intron Length:
468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATATAT
5'SS Class:
strong_major
3'SS Sequence:
GATCTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATACAT
U12 Branch Point Sequence:
ACATCATGATCT
Flanking Amino Acid:
YVNGKTFLEKRYNEDLELED
Intron Amino Acid Position:
418

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
79.6
29.2
Major BPS
66.1
0.4
1
73
31.5
Major PPT
82.5
0.73
0.9
76.1
37.6
Minor 5ss
39.7
-1.2
3.1
56.3
47.9
Minor BPS
47.5
-0.1
2
65.75
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022687
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045319
57877881 - 57883618
5738