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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57883121_57883202_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
57883121 - 57883202
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTAGCAAA
5'SS Class:
major
3'SS Sequence:
TTTCCTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
ATTCACTGAACT
Flanking Amino Acid:
AIHTAILTLKESFEGQMTED
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.1
75.3
36.2
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
87.6
0.85
0.7
83.3
25.1
Minor 5ss
35.1
-1.7
2.7
40.3
45.5
Minor BPS
64.3
0.53
1.6
82.68
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022687
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045319
57877881 - 57883618
5738