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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57888341_57888459_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
57888341 - 57888459
Intron Length:
119

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTGTA
5'SS Class:
major
3'SS Sequence:
TTTCATCTGATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATCAT
U12 Branch Point Sequence:
TTTGCTTTCATC
Flanking Amino Acid:
WVEVPDACASGNNVSNMSVQ
Intron Amino Acid Position:
12

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1.1
72.4
39.5
Major BPS
80.4
0.76
1
80.3
31.8
Major PPT
72.5
0.51
1
69.3
36.7
Minor 5ss
34.4
-1.8
3.5
39.8
46.2
Minor BPS
59.8
0.29
1.8
73.34
38.7

Associated Gene:

Gene:
C7orf25
Ensembl Gene ID:
ENSAPLG00000000791
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000000767
57887822 - 57889738
1917