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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_57979088_57990014_R

Intron Information:

Intron Rank:
131984
Intron Class:
major
Intron Phase:
Intron Coordinates:
57979088 - 57990014
Intron Length:
10927

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TCCTTTTTGACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TCCTTTTTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.3
0.9
0.9
84.2
29.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
81.1
0.7
0.9
78.8
33.2
Minor 5ss
40.8
-1
3.1
57.9
46.7
Minor BPS
66.2
0.5
1.2
68.85
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018246
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017643
57978722 - 57990778
12057