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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5798443_5799630_R

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5798443 - 5799630
Intron Length:
1188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCC|GTACGTCCC
5'SS Class:
weak_major
3'SS Sequence:
CCGTTCTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAT
U12 Branch Point Sequence:
TGATGCTTAGCT
Flanking Amino Acid:
VFKDHWLKHPGLAQLCVTIE
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.1
0.19
1.4
52.1
45.1
Major BPS
68
0.45
1
57.8
39
Major PPT
78.7
0.65
0.8
72.8
32
Minor 5ss
36.3
-1.6
3.1
50
39.4
Minor BPS
58.5
0.34
2
77.91
44

Associated Gene:

Gene:
ACVR2B
Ensembl Gene ID:
ENSAPLG00000012223
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012770
5798248 - 5816727
18480