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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5799762_5801658_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5799762 - 5801658
Intron Length:
1897

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
GCTTGCACTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TGTTTCTGTACT
Flanking Amino Acid:
ELVSRCRAVDGPVDEYMLPF
Intron Amino Acid Position:
354

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.9
82.6
29.6
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
71.9
0.49
0.9
66.9
39.3
Minor 5ss
37.2
-1.4
3
46.4
43
Minor BPS
61.1
0.43
1.8
81.47
39.6

Associated Gene:

Gene:
ACVR2B
Ensembl Gene ID:
ENSAPLG00000012223
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012770
5798248 - 5816727
18480