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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5801798_5803352_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5801798 - 5803352
Intron Length:
1555

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATCTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAC
U12 Branch Point Sequence:
TGGAATTTAACT
Flanking Amino Acid:
GKPPGDTHGQVGTRRYMAPE
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
1
80.7
34.7
Major BPS
80.9
0.77
0.8
81.7
25.4
Major PPT
85.3
0.79
0.6
81.4
23.6
Minor 5ss
49.9
-0
2.8
73.7
42.8
Minor BPS
61.4
0.44
1.6
74.57
41.9

Associated Gene:

Gene:
ACVR2B
Ensembl Gene ID:
ENSAPLG00000012223
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012770
5798248 - 5816727
18480