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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_58049138_58050700_R

Intron Information:

Intron Rank:
137358
Intron Class:
major
Intron Phase:
Intron Coordinates:
58049138 - 58050700
Intron Length:
1563

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGTTGTT
5'SS Class:
major
3'SS Sequence:
TTTCCTCCCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TAACCCATAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
78.1
36.6
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
83.1
0.74
0.7
81.4
23.6
Minor 5ss
37.3
-1.4
3.6
57.9
46.8
Minor BPS
54.8
0.15
1.7
66.23
38.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021399
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037371
58048803 - 58057897
9095