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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_58084411_58087530_F

Intron Information:

Intron Rank:
131324
Intron Class:
major
Intron Phase:
Intron Coordinates:
58084411 - 58087530
Intron Length:
3120

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCTCT
5'SS Class:
strong_major
3'SS Sequence:
ATATATCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TGATTTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.8
81.4
33.4
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
77.2
0.61
0.9
69.8
40.5
Minor 5ss
46.5
-0.4
2.8
65.7
45.4
Minor BPS
67.8
0.64
1.3
78.53
37.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020554
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019531
58083969 - 58102383
18415