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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_58087827_58090097_F

Intron Information:

Intron Rank:
131328
Intron Class:
major
Intron Phase:
Intron Coordinates:
58087827 - 58090097
Intron Length:
2271

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCAAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATGTGATTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.5
27.6
Major BPS
79
0.72
1
78.4
31.2
Major PPT
74.5
0.55
0.9
70.9
33.7
Minor 5ss
36.7
-1.5
2.8
41.8
38.8
Minor BPS
59.6
0.38
2
79.61
42.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020554
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024934
58087531 - 58102383
14853