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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_58087827_58092083_F

Intron Information:

Intron Rank:
131325
Intron Class:
major
Intron Phase:
Intron Coordinates:
58087827 - 58092083
Intron Length:
4257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTTTAT
U12 Branch Point Sequence:
GTTTATTTCAGT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
0.9
76.5
27.6
Major BPS
72.5
0.56
1.1
63.4
44
Major PPT
87.5
0.84
0.8
80.3
37.3
Minor 5ss
36.7
-1.5
2.8
41.8
38.8
Minor BPS
48.5
-0
2.2
73.23
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020554
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019531
58083969 - 58102383
18415