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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_58096844_58101982_F

Intron Information:

Intron Rank:
131327
Intron Class:
major
Intron Phase:
Intron Coordinates:
58096844 - 58101982
Intron Length:
5139

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTAATGA
5'SS Class:
major
3'SS Sequence:
CCTTCCTCTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
AACATCCTAACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1
59.8
35.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
82.5
0.73
0.7
76.7
25.3
Minor 5ss
37.3
-1.4
3.1
47.3
48.1
Minor BPS
48.5
-0.2
1.8
52.27
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020554
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020771
58096531 - 58102383
5853