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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5809858_5811171_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5809858 - 5811171
Intron Length:
1314

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTTGTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAA
U12 Branch Point Sequence:
CCCACTTCAACT
Flanking Amino Acid:
PPYGHVDINEDPGPPPPSPL
Intron Amino Acid Position:
172

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
69.4
0.48
1
71.6
33.8
Major PPT
83.6
0.76
0.8
80.1
31.9
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
52.4
0.15
1.7
64.21
46.4

Associated Gene:

Gene:
ACVR2B
Ensembl Gene ID:
ENSAPLG00000012223
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012770
5798248 - 5816727
18480