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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_58109141_58130399_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
58109141 - 58130399
Intron Length:
21259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAGA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTCATTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TGGTCCTTAAAG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.7
40.1
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
83.1
0.74
0.9
82
34.8
Minor 5ss
31.4
-2.1
3.1
40.2
45.5
Minor BPS
71
0.52
1.5
69.75
43

Associated Gene:

Gene:
GLI3
Ensembl Gene ID:
ENSAPLG00000004361
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004545
58108456 - 58322051
213596