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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_5811324_5812673_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5811324 - 5812673
Intron Length:
1350

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCCTCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTAAAA
U12 Branch Point Sequence:
TCTTTCCTCACA
Flanking Amino Acid:
THLPEVTGPEVIYEPPPPTP
Intron Amino Acid Position:
121

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.5
0.98
0.7
80.9
25.7
Major BPS
60.6
0.26
1.1
67.5
35.1
Major PPT
85.1
0.79
0.7
80
25.5
Minor 5ss
27.5
-2.6
3
33.8
42.3
Minor BPS
53.5
0.1
2.1
71.21
41.3

Associated Gene:

Gene:
ACVR2B
Ensembl Gene ID:
ENSAPLG00000012223
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012770
5798248 - 5816727
18480