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Intron Name: Anas_platyrhynchos_platyrhynchos_2_58130563_58180316_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

58130563 - 58180316

Intron Length:

49754

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTAAC

5'SS Class:

strong_major

3'SS Sequence:

TATTTTTTTCCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTGGTAT

U12 Branch Point Sequence:

TCTTTGGTATTT

Flanking Amino Acid:

KAVASSTTSNEDESPGQTYH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.2

0.83

0.8

79.3

28.9

Major BPS

56.4

0.16

1.6

57.4

49.1

Major PPT

91.8

0.94

0.7

84.8

35.4

Minor 5ss

30.7

-2.2

2.6

33.5

35.6

Minor BPS

41.9

-0.5

2.6

66.23

45.5

Associated Gene:

Gene:

GLI3

Ensembl Gene ID:

ENSAPLG00000004361

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000004545

58108456 - 58322051

213596