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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_58228264_58251460_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
58228264 - 58251460
Intron Length:
23197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
TTTTGCCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTTCTT
Flanking Amino Acid:
YEPSPIPPLHVPSALSSSPT
Intron Amino Acid Position:
158

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
79.9
34.9
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
86.4
0.82
0.8
77.7
36.7
Minor 5ss
38.2
-1.3
3
52.2
44.4
Minor BPS
46
-0.2
3.6
83.03
38.5

Associated Gene:

Gene:
GLI3
Ensembl Gene ID:
ENSAPLG00000004361
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004545
58108456 - 58322051
213596