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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_58257447_58265445_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58257447 - 58265445
Intron Length:
7999

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTGAC
5'SS Class:
major
3'SS Sequence:
GTTTACATAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
GTTTACATAACA
Flanking Amino Acid:
LHMEYLHAMDSARFPSPRLS
Intron Amino Acid Position:
276

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.65
1
71.3
32.5
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
69.7
0.44
1
63.5
41.4
Minor 5ss
34.8
-1.7
3.2
45.1
38.2
Minor BPS
64.8
0.46
1.8
78.8
36.7

Associated Gene:

Gene:
GLI3
Ensembl Gene ID:
ENSAPLG00000004361
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004545
58108456 - 58322051
213596