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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_58281230_58282707_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58281230 - 58282707
Intron Length:
1478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGAC
5'SS Class:
strong_major
3'SS Sequence:
CAACTGCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
ACAACAAAAACA
Flanking Amino Acid:
VSSGPSESTQQNKPTSESAV
Intron Amino Acid Position:
416

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.8
74.6
28.6
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
62
0.27
0.9
54.3
35.9
Minor 5ss
25.3
-2.8
3.2
31.7
42.9
Minor BPS
41.2
-0.6
2
49.86
40.4

Associated Gene:

Gene:
GLI3
Ensembl Gene ID:
ENSAPLG00000004361
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004545
58108456 - 58322051
213596