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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_58282825_58284126_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58282825 - 58284126
Intron Length:
1302

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
CTCTCCTTATGC
Flanking Amino Acid:
LPSPGAGSVQEQPEGMTLVK
Intron Amino Acid Position:
455

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.9
0.73
1
68.7
41.8
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
88.3
0.86
0.7
81.1
31
Minor 5ss
39.5
-1.2
3.3
57
47.3
Minor BPS
55.3
0.15
2
65.52
46.3

Associated Gene:

Gene:
GLI3
Ensembl Gene ID:
ENSAPLG00000004361
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004545
58108456 - 58322051
213596