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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_58284268_58309918_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58284268 - 58309918
Intron Length:
25651

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TCTACCCAAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTCTATTAATC
Flanking Amino Acid:
EFDTQEQLVHHINNDHIHGE
Intron Amino Acid Position:
502

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.1
0.83
1
82.3
25.5
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
64.6
0.33
1
59.2
35.9
Minor 5ss
41.9
-0.9
2.8
53.7
43.8
Minor BPS
66.2
0.49
1.5
76.75
32.7

Associated Gene:

Gene:
GLI3
Ensembl Gene ID:
ENSAPLG00000004361
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004545
58108456 - 58322051
213596