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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_58310830_58314731_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
58310830 - 58314731
Intron Length:
3902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
CCTGGCTTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
TCTAATTTAAGT
Flanking Amino Acid:
KHQNRTHSNEKPYVCKIPGC
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
66
0.36
1.1
60.7
40.2
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
54.5
0.22
1.9
73.22
43.7

Associated Gene:

Gene:
GLI3
Ensembl Gene ID:
ENSAPLG00000004361
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004545
58108456 - 58322051
213596