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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_58318593_58319760_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
58318593 - 58319760
Intron Length:
1168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGATTC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAA
U12 Branch Point Sequence:
GTTTGTTTAACT
Flanking Amino Acid:
APTLPPLIGNGTQSNSSCSV
Intron Amino Acid Position:
813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
0.9
73.8
30.9
Major BPS
72.1
0.55
1.1
63.7
43.9
Major PPT
75.7
0.58
0.9
66.7
40
Minor 5ss
37.2
-1.4
3.2
47.6
42.6
Minor BPS
73
0.8
1.7
88.47
36.7

Associated Gene:

Gene:
GLI3
Ensembl Gene ID:
ENSAPLG00000004361
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004545
58108456 - 58322051
213596