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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_583980_593241_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
583980 - 593241
Intron Length:
9262

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATAAGCT
5'SS Class:
major
3'SS Sequence:
TTTCTCCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAA
U12 Branch Point Sequence:
TTTCTCCCAACA
Flanking Amino Acid:
SQEEAKELKQILQKLKSLAL
Intron Amino Acid Position:
373

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74
0.57
1
67.6
35.7
Major BPS
58.2
0.2
1.1
61
37.5
Major PPT
78.7
0.65
0.8
74.5
29.3
Minor 5ss
38.5
-1.3
3.5
56.9
47.4
Minor BPS
54.9
0.15
1.9
73.95
37.2

Associated Gene:

Gene:
SNAP47
Ensembl Gene ID:
ENSAPLG00000005035
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042628
583833 - 605080
21248
ENSAPLT00000034054
583315 - 605080
21766
ENSAPLT00000021667
583315 - 603941
20627
ENSAPLT00000005194
583315 - 606413
23099
ENSAPLT00000048243
583833 - 605080
21248