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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_2_58439544_58442209_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
58439544 - 58442209
Intron Length:
2666

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAACTT
5'SS Class:
strong_major
3'SS Sequence:
GTTCTTGTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
CTTCACAGAAAA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
77.9
36.7
Major BPS
68.7
0.46
1
71.3
34
Major PPT
81.3
0.7
0.9
72.8
42.2
Minor 5ss
37.2
-1.4
3.4
56.5
47.6
Minor BPS
43.8
-0.4
1.9
57.71
40.6

Associated Gene:

Gene:
INHBA
Ensembl Gene ID:
ENSAPLG00000018903
Chromosome:
2

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032658
58439131 - 58454301
15171